PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462879653
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family HSF
Protein Properties Length: 189aa    MW: 20390 Da    PI: 10.0052
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462879653genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind101.29.5e-32311222102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   F+ k+++++ d++++ +++w +++nsfvv d+  f++ +Lp +Fkh nf+SFvRQLn+YgF+kv+ ++         weF+h+sF +g+++ll +i 
     462879653  31 FVAKTHQMVCDPRTDAFVRWGRENNSFVVADPAGFSQLLLPCFFKHGNFSSFVRQLNTYGFRKVHPDR---------WEFAHESFLRGQTHLLPRIV 118
                   9********************999*****************************************999.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k+
     462879653 119 RRKK 122
                   *997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004152.9E-4927120IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.105.1E-3528120IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.28E-3229120IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.0E-153154IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004476.2E-2931120IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.0E-156981IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043407094IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.0E-158294IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MDGLHTELAL GLIRFGAGAG SCAEQLPTAP FVAKTHQMVC DPRTDAFVRW GRENNSFVVA  60
DPAGFSQLLL PCFFKHGNFS SFVRQLNTYG FRKVHPDRWE FAHESFLRGQ THLLPRIVRR  120
KKRGELGGGA SCSSSASSPS SGGGTRRRQR EGGAGLRASG GGAGLTNSTD LDTPVETPFP  180
FCLLGQGFF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B9e-223112029129Heat shock factor protein 1
5d5v_B9e-223112029129Heat shock factor protein 1
5d5v_D9e-223112029129Heat shock factor protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0694791e-126AK069479.1 Oryza sativa Japonica Group cDNA clone:J023019J23, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003566902.14e-75PREDICTED: heat stress transcription factor C-1a-like
SwissprotQ6VBA45e-72HFC1A_ORYSJ; Heat stress transcription factor C-1a
TrEMBLI1HPK74e-75I1HPK7_BRADI; Uncharacterized protein
STRINGBRADI2G44050.11e-74(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.12e-43heat shock transcription factor C1